Projects

Applied Machine Learning/Collaborative Filtering

• Main website project for the RECeSS project

  • We released stanscofi, a helper Python Package for the development of collaborative-filtering based approaches, and benchscofi for a large, reproducible benchmark on state-of-the-art algorithms.

  • We recently released JELI, an interpretable collaborative filtering algorithm in Python for any recommendation task.

Systems Biology

• Projects coded during my PhD at Inserm Neurodiderot in Paris, France and at Inria SCOOL in Villeneuve-d’Ascq [in Python]

Prioritization Master Regulators (Prioritization of disease-specific master regulatory genes), NORDic Python package (Network identification and prioritization of genes)

• Projects coded during my internship at the MIM UW in Warsaw, Poland [in Python and R]

Expansion Network (Modellling and inference of Boolean networks), Patterning Scenario (Modelling of developmental patterning processes)

Miscellaneous Bioinformatics

• Projects coded during my internship at the OIST in Okinawa, Japan [in R]

SC Explorer (Visualization of single-cell RNAseq data), MineClusters (Detection of cell subfamilies)

• Project designed during my internship at the CBIB in Bordeaux, France [in Python]

TaxoTree, TaxoClassifier, TaxoCluster (Analysis of phylogenetic trees for medical purposes)

Sequential Learning

• Projects coded during my PhD at Inserm Neurodiderot in Paris, France and at Inria SCOOL in Villeneuve-d’Ascq [in Python]

GIFA (Linear Top-m Identification), MisLid (Non-Linear Top-m Identification), W-CPE (Collaborative Top-m identification)

(well, never have I been good at naming things)

Miscellaneous

• A Tower Defense game created with M. Climent-Pommeret and J.-G. Béchard [in Scala]

Bucolic Wars Defense

• A recommender system favoring serendipity with L. Prosperi [in C++]

Serendipity

[Unfortunately suspended] [Update you can see its baby sister HERE]

Articles & Blogs

• A popularization post on drug repurposing C. Réda, B. Villoutreix and A. Delahaye-Duriez. Repositionnement de médicaments In La Revue du Praticien, 21 novembre 2024, 74(9);942-6 link (text in French)

• A blog about science, politics, and stuff with C. Lemarié-Rieusset [in French, worst programming language ever]

Réfléchir

• Discussing the former French system for the admission to higher education with S. Abiteboul [in French]

Binaire (blog of French newspaper Le Monde), The Conversation

• Popularization of classic algorithms on TryAlgo (run by C. Dürr and J.-J. Vie) [in French]